Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
fdhBCandidate formate dehydrogenase iron-sulfur subunit. (205 aa)    
Predicted Functional Partners:
Rta_30480
Candidate formate dehydrogenase subunit C precursor.
 
 0.999
fdhF
Candidate formate dehydrogenase large subunit (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.998
Rta_30590
Formate dehydrogenase (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide)-like protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.984
Rta_30600
Formate dehydrogenase beta subunit; NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit and subunit 1 or 51 kDa subunit fusion, chain E and chain F fusion-like protein.
 
 
 0.941
Rta_08580
Candidate molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.940
Rta_30460
Formate dehydrogenase subunit D-like protein.
 
   
 0.909
Rta_01040
Esterase, Carbohydrate Esterase Family 1-like protein; Serine hydrolase involved in the detoxification of formaldehyde.
     
  0.900
kynB
Conserved hypothetical protein; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation.
     
  0.900
purU
Candidate formyltetrahydrofolate deformylase (Formyl-FH(4) hydrolase); Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
     
  0.900
Rta_06270
Candidate Cytochrome c-type protein.
   
 
 0.886
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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