Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_30800Hypothetical protein. (133 aa)    
Predicted Functional Partners:
Rta_30790
Hypothetical protein.
       0.805
Rta_21360
Type I site-specific deoxyribonuclease-like protein.
   
    0.680
Rta_30810
Candidate molybdopterin and thiamine biosynthesis protein.
       0.584
hsdS
Candidate type I restriction- modification, DNA specificity subunit.
  
    0.528
Rta_21400
Type I restriction enzyme EcoKI specificity protein-like protein.
  
    0.528
Rta_30780
Carboxy-terminal processing protease precursor (C- terminal processing protease)-like protein; Belongs to the peptidase S41A family.
       0.481
hsdM
Candidate type I site-specific restriction-modification system, M subunit.
  
    0.479
Rta_21410
Type I restriction enzyme M protein-like protein.
  
    0.479
Rta_00040
Restriction-modification system, predicted methylase-like protein.
  
    0.413
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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