Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_30890Conserved hypothetical protein. (104 aa)    
Predicted Functional Partners:
Rta_30860
Conserved hypothetical protein.
  
    0.791
Rta_30880
Hypothetical protein.
       0.708
Rta_30900
Conserved hypothetical protein.
       0.664
Rta_30870
Hypothetical protein.
       0.623
Rta_30910
Hypothetical protein.
       0.610
Rta_30280
Stress response protein csbD-like protein; Belongs to the UPF0337 (CsbD) family.
 
    0.567
Rta_36500
Candidate trehalose-6-phosphate synthase, Glycosyltransferase Family 20; Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-alpha-D- glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose- 6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor; Belongs to the glycosyltransferase 20 family.
   
  
 0.530
Rta_15090
Flavoprotein WrbA (Trp repressor binding protein)-like protein.
   
    0.507
Rta_20640
Conserved hypothetical protein.
   
  
 0.426
Rta_30820
Conserved hypothetical protein.
  
  
 0.405
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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