STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rta_30930Transcriptional regulator, MarR family-like protein. (190 aa)    
Predicted Functional Partners:
lhr
Candidate large helicase-related protein.
  
    0.778
tctC-53
Candidate extracytoplasmic binding receptor.
       0.564
Rta_05500
Candidate 4-hydroxyphenylpyruvate dioxygenase.
 
    0.525
tctC-54
Candidate extracytoplasmic binding receptor.
       0.525
Rta_18070
Candidate maleylacetoacetate isomerase.
 
     0.504
Rta_31330
Pentachlorophenol 4-monooxygenase (Pentachlorophenol hydroxylase)-like protein.
  
    0.488
Rta_36540
Conserved hypothetical protein.
 
     0.473
Rta_13900
Transcriptional regulator, MarR family-like protein.
  
     0.471
Rta_31320
Lyases-like protein.
 
   
 0.465
tctC-55
Candidate extracytoplasmic binding receptor.
       0.464
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.