Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
sulPCandidate sulfate permease. (551 aa)    
Predicted Functional Partners:
Rta_30410
Polyketide synthase-like protein.
   
 
 0.848
Rta_12960
Conserved hypothetical protein.
   
 
 0.775
petB
Candidate cytochrome b, membrane protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 
 0.734
nuoM
Candidate NADH:ubiquinone oxidoreductase subunit 13 or 4, chain M.
  
 
 0.591
Rta_06130
Candidate NADH:ubiquinone oxidoreductase subunit 5, chain L.
 
  
 0.586
Rta_04690
Conserved hypothetical protein.
    
 
 0.566
Rta_05840
Conserved hypothetical protein.
    
 
 0.566
Rta_19800
Candidate ankyrin repeat harboring protein.
    
 
 0.566
Rta_30990
Dehydrogenases-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.551
Rta_02520
Candidate Acyl carrier protein.
    
 
 0.481
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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