Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_31040Conserved hypothetical protein. (275 aa)    
Predicted Functional Partners:
Rta_31060
Conserved hypothetical protein.
 
     0.885
Rta_31050
Candidate transporter.
 
    0.812
Rta_36950
Conserved hypothetical protein.
 
    0.758
Rta_31070
GTP cyclohydrolase I-like protein.
  
  
 0.750
Rta_20940
Conserved hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.733
gspL
Candidate general secretion pathway protein L, component of type II secretion system.
 
     0.718
Rta_36410
Conserved hypothetical protein.
  
     0.712
Rta_36400
Conserved hypothetical protein.
  
     0.693
Rta_15340
Hypothetical protein.
 
     0.685
Rta_08600
Conserved hypothetical protein.
  
     0.677
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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