Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_31060Conserved hypothetical protein. (140 aa)    
Predicted Functional Partners:
Rta_31040
Conserved hypothetical protein.
 
     0.885
Rta_31070
GTP cyclohydrolase I-like protein.
 
     0.842
Rta_19460
Candidate histidine kinase, atypical hybrid.
  
 
 0.797
Rta_31050
Candidate transporter.
  
    0.732
Rta_04410
Candidate histidine kinase, hybrid; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.717
Rta_24940
Candidate histidine kinase, unorthodox.
  
  
 0.715
Rta_33830
Candidate histidine kinase, unorthodox.
  
 
 0.688
Rta_31120
Conserved hypothetical protein.
 
     0.639
Rta_12360
Candidate histidine kinase, atypical hybrid.
  
 
 0.633
Rta_31030
Candidate histidine kinase, classic.
  
 
 0.606
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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