Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nudBCandidate dATP pyrophosphohydrolase. (160 aa)    
Predicted Functional Partners:
Rta_31070
GTP cyclohydrolase I-like protein.
  
 
 0.963
phoD
Candidate alkaline phosphatase D precursor.
     
  0.900
aspS
Candidate aspartyl-tRNA synthetase (Aspartate--tRNA ligase); Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
  
   0.836
Rta_31120
Conserved hypothetical protein.
 
     0.825
clsB
Cardiolipin synthetase (Cardiolipin synthase)-like protein; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
   
   0.810
Rta_31100
Conserved hypothetical protein.
       0.803
Rta_31080
ATP-dependent DNA ligase-like protein.
       0.802
Rta_31140
Cytotoxic protein ccdB (LetB protein)-like protein.
       0.780
Rta_31090
Candidate membrane protein.
       0.773
Rta_31150
Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.773
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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