Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Rta_31220Conserved hypothetical protein. (360 aa)    
Predicted Functional Partners:
ubiE
Candidate Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
       0.799
Rta_31210
Conserved hypothetical protein.
 
     0.734
Rta_26710
Conserved hypothetical protein; Belongs to the UPF0307 family.
  
     0.641
ubiB
Candidate 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.
       0.632
Rta_13620
Conserved hypothetical protein.
  
     0.566
Rta_12810
Candidate membrane protein.
  
     0.556
Rta_31240
Conserved hypothetical protein.
       0.542
Rta_03170
Candidate membrane protein.
  
     0.510
Rta_24650
Candidate phasin (PHA granule-associated protein).
  
     0.503
Rta_20190
Intracellular septation protein-like protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
  
     0.502
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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