Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_31340Conserved hypothetical protein. (66 aa)    
Predicted Functional Partners:
Rta_31330
Pentachlorophenol 4-monooxygenase (Pentachlorophenol hydroxylase)-like protein.
 
    0.954
Rta_31320
Lyases-like protein.
 
     0.830
Rta_01740
Pentachlorophenol 4-monooxygenase-like protein.
 
    0.805
Rta_07500
Conserved hypothetical protein.
 
     0.799
valS
Candidate valyl-tRNA synthetase (Valine--tRNA ligase); Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.594
dctM-7
Candidate small permease component.
  
     0.543
Rta_18070
Candidate maleylacetoacetate isomerase.
 
     0.516
dctP-7
Candidate periplasmic component.
  
     0.510
Rta_31310
Glycerophosphodiester phosphodiesterase (Glycerophosphoryl diester phosphodiesterase)-like protein.
       0.496
dctP-8
Candidate periplasmic component.
  
     0.477
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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