Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_31445Conserved hypothetical protein. (193 aa)    
Predicted Functional Partners:
Rta_35280
Ubiquinone biosynthesis protein COQ7-like protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
   
 0.609
Rta_31420
Guanylate kinase (GMP kinase)-like protein.
   
   0.549
Rta_31380
Short-chain alcohol dehydrogenase of unknown specificity-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
   0.527
Rta_31410
Hypothetical protein.
  
  
 0.526
Rta_31430
1-deoxy-D-xylulose-5-phosphate pyruvate-lyase (carboxylating).
       0.517
tkt
Conserved hypothetical protein.
       0.517
Rta_04110
Conserved hypothetical protein.
  
     0.515
Rta_31390
Conserved hypothetical protein.
       0.506
Rta_31400
Hypothetical protein.
       0.506
Rta_31330
Pentachlorophenol 4-monooxygenase (Pentachlorophenol hydroxylase)-like protein.
 
 
 0.454
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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