Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_31610Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family. (309 aa)    
Predicted Functional Partners:
Rta_31590
Candidate ABC type branched chain amino acid transport systems, ATP-binding component.
 
  
 0.966
Rta_12250
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
 0.961
Rta_31580
Candidate ABC type branched chain amino acid transport systems, ATP-binding component.
 
  
 0.954
Rta_31600
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
0.945
Rta_18510
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
 0.885
Rta_22370
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
 0.876
Rta_12240
Candidate ABC type branched chain amino acid transport systems, ATP-binding component.
 
  
 0.865
Rta_19450
Candidate ABC type branched chain amino acid transport systems, periplasmic component.
 
  
 0.849
Rta_18500
Candidate ABC type branched chain amino acid transport systems, ATP-binding component.
 
  
 0.826
Rta_12220
Candidate ABC type branched chain amino acid transport systems, periplasmic component.
 
  
 0.825
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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