Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
trxBCandidate thioredoxin reductase (NADPH). (331 aa)    
Predicted Functional Partners:
trxA
Candidate thioredoxin 1; Belongs to the thioredoxin family.
 
 0.988
Rta_22660
Disulfide oxidoreductase-like protein.
     
 0.960
Rta_11850
Disulfide oxidoreductase-like protein.
  
  
0.942
Rta_13470
Bifunctional protein : sensor, cNMP-binding domain-like protein.
 
  
0.934
selD
Selenium donor protein; Synthesizes selenophosphate from selenide and ATP.
     
 0.905
trxC
Candidate thioredoxin 2.
 
 
 0.810
Rta_36760
Thioredoxin-like protein.
  
 
 0.788
Rta_05290
Protein-disulfide reductase (thioredoxin)-like protein.
  
 
 0.774
gshB
Candidate glutathione synthetase (glutathione synthase); Belongs to the prokaryotic GSH synthase family.
      
 0.750
Rta_30710
Thioredoxin-like protein.
   
 
 0.738
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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