Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpmBCandidate 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (77 aa)    
Predicted Functional Partners:
rpmG
Candidate 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
 
 0.998
rpsN
Candidate 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.991
rpmI
Candidate 50S ribosomal protein L35 (ribosomal subunit protein A); Belongs to the bacterial ribosomal protein bL35 family.
 
 
 0.986
rpsR
Candidate ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
 
 
 0.986
rpsF
Candidate 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
 
 
 0.986
rpmF
Candidate 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.985
rpmE
50S ribosomal protein L31 type B; Belongs to the bacterial ribosomal protein bL31 family.
 
 
 0.984
rplS
Candidate 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.983
rpsO
Candidate 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 
 0.983
rpsT
Candidate Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.983
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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