Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_31710Stearoyl-coa desaturase oxidorecuctase protein-like protein. (404 aa)    
Predicted Functional Partners:
Rta_04810
Fatty acid desaturase, membrane protein-like protein.
  
  
 
0.918
Rta_35280
Ubiquinone biosynthesis protein COQ7-like protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
  
 
   0.664
Rta_32060
Conserved hypothetical protein.
  
     0.616
Rta_31720
tRNA and rRNA cytosine-C5-methylases-like protein.
   
   0.583
purN
5 -phosphoribosylglycinamide transformylase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
       0.578
Rta_30410
Polyketide synthase-like protein.
   
 
 0.542
Rta_33930
Conserved hypothetical protein.
  
     0.537
Rta_24060
Conserved hypothetical protein.
  
     0.507
Rta_01880
Conserved hypothetical protein.
  
     0.471
Rta_28120
Conserved hypothetical protein.
  
     0.469
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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