Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_31760Conserved hypothetical protein. (457 aa)    
Predicted Functional Partners:
Rta_31750
Butyryl-CoA dehydrogenase (Short-chain-acyl-CoA dehydrogenase)-like protein; (Unsaturated acyl-CoA reductase) (Butyryl dehydrogenase).
 
     0.821
Rta_31740
acyl-CoA dehydrogenase-like protein.
 
     0.780
Rta_34620
Hypothetical protein.
 
     0.646
Rta_03720
Candidate transporter.
  
     0.607
Rta_03100
Hypothetical protein.
  
     0.567
purN
5 -phosphoribosylglycinamide transformylase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
       0.529
Rta_20260
Periplasmic component of an ABC type amino acid transport system-like protein.
  
    0.527
Rta_31720
tRNA and rRNA cytosine-C5-methylases-like protein.
       0.522
Rta_32450
Indolepyruvate ferredoxin oxidoreductase beta subunit-like protein.
  
     0.516
Rta_13980
Periplasmic component of an ABC type amino acid transport system-like protein.
  
    0.504
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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