STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rta_32020Sulfurtransferases-like protein. (544 aa)    
Predicted Functional Partners:
iscU
Candidate Fe-S cluster assembly protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 
 0.983
Rta_32030
Conserved hypothetical protein.
 
    0.719
Rta_00430
Hypothetical protein.
    
   0.701
Rta_31120
Conserved hypothetical protein.
    
   0.701
Rta_30410
Polyketide synthase-like protein.
  
 
 0.497
Rta_11990
Conserved hypothetical protein.
  
  
 0.463
gltB
Candidate Ferredoxin-dependent glutamate synthase.
  
  
 0.460
iscA
Candidate Fe-S cluster assembly protein; Belongs to the HesB/IscA family.
  
 
 0.442
paaD
Candidate Phenylacetic acid degradation protein.
  
  
 0.441
Rta_11280
Candidate isoquinoline 1-oxidoreductase, alpha subunit.
  
  
 0.413
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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