Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_32400Conserved hypothetical protein. (303 aa)    
Predicted Functional Partners:
Rta_32380
Candidate xanthine dehydrogenase small subunit.
       0.757
Rta_32390
Candidate xanthine dehydrogenase large subunit.
       0.757
recJ
Candidate single-stranded DNA-specific exonuclease.
    
 
 0.731
Rta_32350
Candidate Uncharacterized ABC type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
       0.545
Rta_32360
Candidate Uncharacterized ABC type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
       0.545
Rta_32370
Candidate Uncharacterized ABC type transport system, ATP-binding component with duplicated domains.
       0.545
Rta_06800
Hypothetical protein.
  
     0.529
Rta_32340
Candidate Uncharacterized ABC type transport system, periplasmic component.
       0.459
Rta_32410
Animal glycogenin, Glycosyltransferase Family 8-like protein.
       0.456
Rta_14610
Conserved hypothetical protein.
  
     0.444
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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