Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_32430Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family. (297 aa)    
Predicted Functional Partners:
Rta_32420
Conserved hypothetical protein.
       0.693
Rta_07460
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.648
Rta_32470
Candidate 4-hydroxybenzoyl-CoA thioesterase.
 
     0.618
Rta_32450
Indolepyruvate ferredoxin oxidoreductase beta subunit-like protein.
 
     0.603
Rta_32440
Indolepyruvate ferredoxin oxidoreductase alpha subunit-like protein.
       0.551
Rta_18570
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.544
Rta_14340
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.534
Rta_03130
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.526
tctC-56
Candidate extracytoplasmic binding receptor.
       0.492
Rta_26740
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.484
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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