Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rta_08050 | Rta_13920 | Rta_08050 | Rta_13920 | Transporter-like protein. | Conserved hypothetical protein. | 0.427 |
Rta_08050 | Rta_32440 | Rta_08050 | Rta_32440 | Transporter-like protein. | Indolepyruvate ferredoxin oxidoreductase alpha subunit-like protein. | 0.490 |
Rta_08050 | Rta_32450 | Rta_08050 | Rta_32450 | Transporter-like protein. | Indolepyruvate ferredoxin oxidoreductase beta subunit-like protein. | 0.619 |
Rta_08050 | Rta_32470 | Rta_08050 | Rta_32470 | Transporter-like protein. | Candidate 4-hydroxybenzoyl-CoA thioesterase. | 0.449 |
Rta_13920 | Rta_08050 | Rta_13920 | Rta_08050 | Conserved hypothetical protein. | Transporter-like protein. | 0.427 |
Rta_13920 | Rta_18140 | Rta_13920 | Rta_18140 | Conserved hypothetical protein. | Oxidoreductases-like protein. | 0.616 |
Rta_13920 | Rta_32440 | Rta_13920 | Rta_32440 | Conserved hypothetical protein. | Indolepyruvate ferredoxin oxidoreductase alpha subunit-like protein. | 0.849 |
Rta_13920 | Rta_32470 | Rta_13920 | Rta_32470 | Conserved hypothetical protein. | Candidate 4-hydroxybenzoyl-CoA thioesterase. | 0.417 |
Rta_13920 | dctM-10 | Rta_13920 | Rta_32500 | Conserved hypothetical protein. | Candidate small permease component. | 0.713 |
Rta_13920 | dctP-10 | Rta_13920 | Rta_32510 | Conserved hypothetical protein. | Candidate periplasmic component. | 0.701 |
Rta_18140 | Rta_13920 | Rta_18140 | Rta_13920 | Oxidoreductases-like protein. | Conserved hypothetical protein. | 0.616 |
Rta_18140 | Rta_32440 | Rta_18140 | Rta_32440 | Oxidoreductases-like protein. | Indolepyruvate ferredoxin oxidoreductase alpha subunit-like protein. | 0.489 |
Rta_18140 | Rta_32450 | Rta_18140 | Rta_32450 | Oxidoreductases-like protein. | Indolepyruvate ferredoxin oxidoreductase beta subunit-like protein. | 0.535 |
Rta_32420 | Rta_32430 | Rta_32420 | Rta_32430 | Conserved hypothetical protein. | Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family. | 0.693 |
Rta_32420 | Rta_32440 | Rta_32420 | Rta_32440 | Conserved hypothetical protein. | Indolepyruvate ferredoxin oxidoreductase alpha subunit-like protein. | 0.569 |
Rta_32420 | Rta_32450 | Rta_32420 | Rta_32450 | Conserved hypothetical protein. | Indolepyruvate ferredoxin oxidoreductase beta subunit-like protein. | 0.589 |
Rta_32420 | Rta_32470 | Rta_32420 | Rta_32470 | Conserved hypothetical protein. | Candidate 4-hydroxybenzoyl-CoA thioesterase. | 0.542 |
Rta_32420 | tctC-56 | Rta_32420 | Rta_32460 | Conserved hypothetical protein. | Candidate extracytoplasmic binding receptor. | 0.447 |
Rta_32430 | Rta_32420 | Rta_32430 | Rta_32420 | Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family. | Conserved hypothetical protein. | 0.693 |
Rta_32430 | Rta_32440 | Rta_32430 | Rta_32440 | Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family. | Indolepyruvate ferredoxin oxidoreductase alpha subunit-like protein. | 0.551 |
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