Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dctM-10Candidate small permease component. (172 aa)    
Predicted Functional Partners:
dctP-10
Candidate periplasmic component.
 
  
 0.960
fcbT3-3
Candidate large permease component.
 
     0.833
Rta_13920
Conserved hypothetical protein.
  
     0.713
Rta_13910
Conserved hypothetical protein.
  
     0.698
Rta_32440
Indolepyruvate ferredoxin oxidoreductase alpha subunit-like protein.
  
     0.652
Rta_32450
Indolepyruvate ferredoxin oxidoreductase beta subunit-like protein.
  
     0.635
Rta_32480
Conserved hypothetical protein.
       0.576
dctP
Candidate periplasmic component.
 
  
 0.566
Rta_32520
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
       0.534
dctP-8
Candidate periplasmic component.
 
  
 0.418
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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