Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_32600Xanthine and CO dehydrogenases maturation factor-like protein. (237 aa)    
Predicted Functional Partners:
Rta_32390
Candidate xanthine dehydrogenase large subunit.
 
 
 0.969
Rta_32380
Candidate xanthine dehydrogenase small subunit.
 
 
 0.939
guaD
Candidate guanine deaminase (Guanase); Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
 
 0.891
Rta_32590
Candidate membrane protein.
 
    0.883
Rta_32640
Candidate transthyretin protein precursor; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
     0.737
Rta_32650
GlcNAc deacetylase, Carbohydrate Esterase Family 4-like protein.
 
     0.702
Rta_11300
Conserved hypothetical protein.
  
  
 0.616
Rta_13390
Candidate carbon monoxide dehydrogenase medium chain.
 
  
 0.521
ppnP
Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
     
  0.500
Rta_32580
Conserved hypothetical protein.
       0.497
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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