Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_32850Hypothetical protein. (61 aa)    
Predicted Functional Partners:
ureB
Candidate urease beta subunit (Urea amidohydrolase); Belongs to the urease beta subunit family.
       0.727
ureC
Candidate urease alpha subunit (Urea amidohydrolase).
       0.727
ureE
Candidate urease accessory protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
       0.727
ureF
Candidate urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
       0.727
ureA
Candidate urease gamma subunit (Urea amidohydrolase gamma subunit); Belongs to the urease gamma subunit family.
       0.697
ureG
Candidate urease accessory protein; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
       0.542
Rta_32820
Candidate response regulator, NarL.
       0.520
Rta_32830
Candidate histidine kinase, hybrid.
       0.520
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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