Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_33460Candidate Na+ driven multidrug efflux. (466 aa)    
Predicted Functional Partners:
ilvD-4
Candidate dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.732
tctC-58
Candidate extracytoplasmic binding receptor.
       0.664
Rta_11420
Candidate membrane protein, related to cation efflux system protein.
  
     0.633
Rta_33430
Candidate bifunctional protein : D-galactarate dehydratase; Altronate hydrolase (Altronic acid hydratase).
       0.605
gapA
Candidate glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.556
rpsA
Candidate 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.528
Rta_07700
Candidate phytoene synthase.
   
  
 0.476
Rta_15730
Phytoene synthase-like protein.
   
  
 0.476
Rta_15740
Phytoene synthase-like protein.
   
  
 0.476
Rta_33420
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
       0.444
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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