Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_33580Conserved hypothetical protein. (364 aa)    
Predicted Functional Partners:
Rta_11990
Conserved hypothetical protein.
  
 0.900
Rta_33590
A-glycosyltransferase, Glycosyltransferase Family 4-like protein.
 
   
 0.703
phnC-2
Candidate ABC type phosphate/phosphonate transport systems, ATP-binding component; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
       0.674
Rta_33570
Candidate ABC type phosphate/phosphonate transport systems, periplasmic component.
       0.668
selD
Selenium donor protein; Synthesizes selenophosphate from selenide and ATP.
       0.573
Rta_33540
Candidate ABC type phosphate/phosphonate transport systems, permease component.
       0.513
Rta_33550
Candidate ABC type phosphate/phosphonate transport systems, permease component.
       0.513
Rta_30970
Arylsulfatase precursor-like protein.
  
   0.460
Rta_26120
Candidate ABC type transport system, involved in lipoprotein release, permease component with duplicated domains.
 
    0.423
Rta_19970
acyl-CoA dehydrogenases-like protein.
  
     0.406
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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