Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
selDSelenium donor protein; Synthesizes selenophosphate from selenide and ATP. (357 aa)    
Predicted Functional Partners:
Rta_04000
NADH dehydrogenase-like protein.
     0.913
Rta_11850
Disulfide oxidoreductase-like protein.
     
 0.905
Rta_13470
Bifunctional protein : sensor, cNMP-binding domain-like protein.
     
 0.905
Rta_22660
Disulfide oxidoreductase-like protein.
     
 0.905
trxB
Candidate thioredoxin reductase (NADPH).
     
 0.905
iscS
Candidate cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
  
 
 0.890
Rta_19150
Conserved hypothetical protein; Belongs to the SelU family.
 
   
 0.872
Rta_33590
A-glycosyltransferase, Glycosyltransferase Family 4-like protein.
       0.788
Rta_33570
Candidate ABC type phosphate/phosphonate transport systems, periplasmic component.
 
     0.575
Rta_33580
Conserved hypothetical protein.
       0.573
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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