Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_33680Conserved hypothetical protein. (228 aa)    
Predicted Functional Partners:
Rta_33670
Cytochrome AA3 controlling protein, membrane protein-like protein.
 
 0.985
Rta_33690
Cytochrome oxidase complex biogenesis factor-like protein.
 
 
 0.976
ctaB
Candidate protoheme IX farnesyltransferase (Heme O synthase), membrane protein; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.959
ctaC-2
Candidate cytochrome c oxidase polypeptide II precursor (Cytochrome aa3 subunit 2); Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 0.935
ctaG
Candidate cytochrome C oxidase assembly protein.
 
 0.910
Rta_33700
Conserved hypothetical protein.
 
     0.909
ctaC
Candidate Cytochrome c oxidase polypeptide II precursor (Cytochrome aa3 subunit 2).
 
 0.824
Rta_33650
SCO1/2 family protein-like protein.
       0.786
Rta_33720
Conserved hypothetical protein.
 
    0.784
ctaE
Oxidase AA(3) subunit 3; membrane protein.
 
  
 0.756
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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