Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_33700Conserved hypothetical protein. (76 aa)    
Predicted Functional Partners:
Rta_33680
Conserved hypothetical protein.
 
     0.909
Rta_33670
Cytochrome AA3 controlling protein, membrane protein-like protein.
 
    0.831
Rta_33690
Cytochrome oxidase complex biogenesis factor-like protein.
 
     0.826
Rta_33720
Conserved hypothetical protein.
  
     0.765
ctaB
Candidate protoheme IX farnesyltransferase (Heme O synthase), membrane protein; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
     0.752
Rta_12080
Candidate membrane protein.
  
     0.689
Rta_07890
Cytochrome c biogenesis protein, membrane protein-like protein.
  
     0.634
gspC
Candidate general secretion pathway protein C, component of type II secretion system.
  
     0.629
Rta_33650
SCO1/2 family protein-like protein.
       0.614
Rta_28120
Conserved hypothetical protein.
  
     0.569
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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