Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
phrBCandidate deoxyribodipyrimidine photolyase (photoreactivating enzyme); Belongs to the DNA photolyase family. (497 aa)    
Predicted Functional Partners:
Rta_37150
Deoxyribodipyrimidine photolyase-like protein.
 
   
 0.800
plsC-2
Candidate 1-acylglycerol-3-phosphate O-acyltransferase (lyso-phosphatidic acid acyltransferase).
   
   0.687
phrA
Candidate DNA repair photolyase.
      
 0.670
pyrR
Candidate bifunctional protein : Pyrimidine operon attenuation regulatory protein; Uracil phosphoribosyltransferase.
       0.657
Rta_34100
Holliday junction resolvase-like protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.657
Rta_34110
Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family.
       0.657
pyrB
Candidate aspartate carbamoyltransferase (Aspartate transcarbamylase); Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
       0.640
pyrC-2
Candidate dihydroorotase.
       0.625
Rta_27535
CrtK protein, membrane protein-like protein.
  
  
 0.569
sodB
Candidate superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.528
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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