| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Rta_34270 | dusB | Rta_34270 | Rta_34260 | Conserved hypothetical protein. | Candidate tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | 0.664 |
| Rta_34270 | fis | Rta_34270 | Rta_34250 | Conserved hypothetical protein. | Candidate transcriptional regulator Fis (Factor-for-inversion stimulation protein), Fis family; Belongs to the transcriptional regulatory Fis family. | 0.624 |
| Rta_34270 | purH | Rta_34270 | Rta_34240 | Conserved hypothetical protein. | Candidate bifunctional purine biosynthesis protein : Phosphoribosylaminoimidazolecarboxamide formyltransferase; IMP cyclohydrolase. | 0.623 |
| Rta_38230 | dusB | Rta_38230 | Rta_34260 | Ribonuclease P protein component (RNaseP protein)-like protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Candidate tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | 0.702 |
| Rta_38230 | fis | Rta_38230 | Rta_34250 | Ribonuclease P protein component (RNaseP protein)-like protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Candidate transcriptional regulator Fis (Factor-for-inversion stimulation protein), Fis family; Belongs to the transcriptional regulatory Fis family. | 0.403 |
| Rta_38230 | polA | Rta_38230 | Rta_12840 | Ribonuclease P protein component (RNaseP protein)-like protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Candidate DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.531 |
| Rta_38230 | rimM | Rta_38230 | Rta_12110 | Ribonuclease P protein component (RNaseP protein)-like protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Candidate 16S rRNA processing protein rimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.762 |
| Rta_38230 | rpsP | Rta_38230 | Rta_12100 | Ribonuclease P protein component (RNaseP protein)-like protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Candidate 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.806 |
| Rta_38230 | rpsU | Rta_38230 | Rta_26680 | Ribonuclease P protein component (RNaseP protein)-like protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Candidate 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.781 |
| Rta_38230 | suhB | Rta_38230 | Rta_26790 | Ribonuclease P protein component (RNaseP protein)-like protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Candidate inositol-1-monophosphatase (Inositol-1- phosphatase). | 0.419 |
| Rta_38230 | trmD | Rta_38230 | Rta_12120 | Ribonuclease P protein component (RNaseP protein)-like protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | tRNA [GM37] methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.632 |
| dusB | Rta_34270 | Rta_34260 | Rta_34270 | Candidate tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | Conserved hypothetical protein. | 0.664 |
| dusB | Rta_38230 | Rta_34260 | Rta_38230 | Candidate tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | Ribonuclease P protein component (RNaseP protein)-like protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.702 |
| dusB | fis | Rta_34260 | Rta_34250 | Candidate tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | Candidate transcriptional regulator Fis (Factor-for-inversion stimulation protein), Fis family; Belongs to the transcriptional regulatory Fis family. | 0.977 |
| dusB | polA | Rta_34260 | Rta_12840 | Candidate tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | Candidate DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.571 |
| dusB | purH | Rta_34260 | Rta_34240 | Candidate tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | Candidate bifunctional purine biosynthesis protein : Phosphoribosylaminoimidazolecarboxamide formyltransferase; IMP cyclohydrolase. | 0.841 |
| dusB | rimM | Rta_34260 | Rta_12110 | Candidate tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | Candidate 16S rRNA processing protein rimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.620 |
| dusB | rpsP | Rta_34260 | Rta_12100 | Candidate tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | Candidate 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.625 |
| dusB | rpsU | Rta_34260 | Rta_26680 | Candidate tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | Candidate 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.541 |
| dusB | suhB | Rta_34260 | Rta_26790 | Candidate tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | Candidate inositol-1-monophosphatase (Inositol-1- phosphatase). | 0.557 |
