Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_34650Candidate ABC transporter, permease component probably involved in multidrug transport. (265 aa)    
Predicted Functional Partners:
nodI
Candidate ABC type multidrug transport system, ATP-binding component; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
 
 
 0.994
Rta_24620
Conserved hypothetical protein.
  
  
 0.726
ohrR
Candidate transcriptional regulator OhrR (Organic hydroperoxide resistance transcriptional regulator), MarR family.
       0.618
Rta_08180
Candidate ABC transporter, multidrug export system, ATP-binding component.
 
  
 0.577
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
       0.546
srkA
Conserved hypothetical protein; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.
 
    0.523
Rta_30160
Candidate ABC type multidrug transport system, ATP-binding component.
  
  
 0.507
ohr
Candidate organic hydroperoxide resistance protein.
     
 0.489
Rta_30410
Polyketide synthase-like protein.
  
  
 0.480
Rta_08190
Candidate ABC transporter, multidrug export system, permease component.
  
  
  0.478
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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