Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_34920Transcriptional regulator, CRP family-like protein. (295 aa)    
Predicted Functional Partners:
Rta_22060
Transcriptional regulator, CRP family-like protein.
  
  
0.926
Rta_05480
Transcriptional regulator, CRP family-like protein.
  
  
 0.923
Rta_03040
Signal transduction protein : sensor, cNMP-binding domain-like protein.
  
  
 0.919
Rta_31660
Transcriptional regulator, CRP family-like protein.
  
  
0.915
Rta_38190
Signal transduction protein : sensor, cNMP-binding domain-like protein.
     
  0.900
Rta_34910
rRNA pseudouridylate synthase F; Belongs to the pseudouridine synthase RsuA family.
       0.795
Rta_34930
long-chain-fatty-acid--CoA ligase-like protein.
 
  
 0.759
Rta_34950
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
     0.616
Rta_34960
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
     0.610
Rta_34970
Candidate ABC type branched chain amino acid transport systems, periplasmic component.
 
     0.609
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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