Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
gspF-2Candidate general secretion pathway protein F, component of type II secretion system. (391 aa)    
Predicted Functional Partners:
gspF
Candidate general secretion pathway protein F.
  
  
 
0.926
gspE-2
Candidate general secretion pathway protein E (Type II traffic warden ATPase), component of type II secretion system.
 
 
 0.926
gspE
Candidate general secretion pathway protein E (Type II traffic warden ATPase).
 
 
 0.915
pilB
Candidate type 4 fimbrial assembly protein pilB, putative traffic ATPase.
 
 
 0.915
Rta_31940
Type IV pilus assembly protein tapB-like protein.
 
 
 0.915
Rta_37350
Bifunctional protein : sensor, GAF domain; type 4 fimbrial assembly protein pilB, general secretion pathway protein E-like protein.
 
 
 0.915
pilD
Candidate type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.871
gspG-2
Candidate pseudopilin, general secretion pathway protein G precursor (PilD-dependent protein), component of type II secretion system.
 
  
 0.821
gspD-2
Candidate secretin, general secretion pathway protein D, component of type II secretion system.
 
  
 0.792
pilT
Candidate type 4 fimbrial assembly protein pilT, putative traffic ATPase.
 
  
 0.786
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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