Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_35120Candidate inner membrane transporter. (1083 aa)    
Predicted Functional Partners:
Rta_35130
Candidate outer membrane transporter.
 
 0.963
Rta_35110
Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.962
Rta_13500
Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.881
Rta_30060
Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.858
Rta_30070
Hypothetical protein.
 
 
 0.854
Rta_16500
Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.842
Rta_16530
Outer membrane protein-like protein.
 
 0.761
Rta_37100
Candidate outer membrane channel.
 
 0.761
Rta_15750
Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.711
Rta_23200
Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.660
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.