Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_35270Candidate outer membrane porin protein, precursor. (373 aa)    
Predicted Functional Partners:
Rta_08150
Lipoprotein precursor-like protein.
   
 
 0.784
Rta_28650
HemY protein-like protein.
  
     0.668
Rta_25710
Conserved hypothetical protein.
  
   
 0.660
Rta_23460
Candidate membrane protein.
  
     0.576
Rta_05290
Protein-disulfide reductase (thioredoxin)-like protein.
  
 
   0.560
Rta_35650
Conserved hypothetical protein.
  
     0.560
Rta_12810
Candidate membrane protein.
  
     0.524
Rta_22980
Conserved hypothetical protein.
  
     0.524
secE
Candidate preprotein translocase SecE subunit; Belongs to the SecE/SEC61-gamma family.
  
   
 0.517
Rta_36900
Conserved hypothetical protein.
  
   
 0.501
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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