Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_35320Conserved hypothetical protein. (173 aa)    
Predicted Functional Partners:
gspD-2
Candidate secretin, general secretion pathway protein D, component of type II secretion system.
  
 
 0.800
gspD
Candidate secretin, general secretion pathway protein D.
  
 
 0.703
Rta_29930
Type III secretion outer membrane protein PscC-like protein.
  
 
 0.703
gspK
Candidate pseudopilin, general secretion pathway protein K precursor (PilD-dependent protein), component of type II secretion system.
  
  
 0.664
gspG-2
Candidate pseudopilin, general secretion pathway protein G precursor (PilD-dependent protein), component of type II secretion system.
  
  
 0.642
gspJ
Candidate pseudopilin, general secretion pathway protein J precursor (PilD-dependent protein), component of type II secretion system.
  
  
 0.627
gspL
Candidate general secretion pathway protein L, component of type II secretion system.
     
 0.616
gspM
Candidate general secretion pathway protein M, component of type II secretion system.
     
 0.594
gspC
Candidate general secretion pathway protein C, component of type II secretion system.
     
 0.565
gspI
Candidate pseudopilin, general secretion pathway protein I precursor (PilD-dependent protein), component of type II secretion system.
  
  
 0.560
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.