Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gspMCandidate general secretion pathway protein M, component of type II secretion system. (169 aa)    
Predicted Functional Partners:
gspL
Candidate general secretion pathway protein L, component of type II secretion system.
  
 
 0.922
gspD-2
Candidate secretin, general secretion pathway protein D, component of type II secretion system.
  
  
 0.830
gspC
Candidate general secretion pathway protein C, component of type II secretion system.
     
 0.809
gspK
Candidate pseudopilin, general secretion pathway protein K precursor (PilD-dependent protein), component of type II secretion system.
  
  
 0.784
gspJ
Candidate pseudopilin, general secretion pathway protein J precursor (PilD-dependent protein), component of type II secretion system.
  
  
 0.780
gspI
Candidate pseudopilin, general secretion pathway protein I precursor (PilD-dependent protein), component of type II secretion system.
  
  
 0.744
gspE-2
Candidate general secretion pathway protein E (Type II traffic warden ATPase), component of type II secretion system.
  
  
 0.736
gspH-2
Candidate pseudopilin, general secretion pathway protein H precursor (PilD-dependent protein), component of type II secretion system.
  
  
 0.718
gspG-2
Candidate pseudopilin, general secretion pathway protein G precursor (PilD-dependent protein), component of type II secretion system.
  
  
 0.610
Rta_35320
Conserved hypothetical protein.
     
 0.594
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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