Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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gspD-2Candidate secretin, general secretion pathway protein D, component of type II secretion system. (735 aa)    
Predicted Functional Partners:
gspE-2
Candidate general secretion pathway protein E (Type II traffic warden ATPase), component of type II secretion system.
 
  
 0.943
gspC
Candidate general secretion pathway protein C, component of type II secretion system.
 
   
 0.942
gspK
Candidate pseudopilin, general secretion pathway protein K precursor (PilD-dependent protein), component of type II secretion system.
 
   
 0.916
gspI
Candidate pseudopilin, general secretion pathway protein I precursor (PilD-dependent protein), component of type II secretion system.
 
  
 0.915
gspD
Candidate secretin, general secretion pathway protein D.
  
  
 
0.913
gspG-2
Candidate pseudopilin, general secretion pathway protein G precursor (PilD-dependent protein), component of type II secretion system.
  
 0.911
gspL
Candidate general secretion pathway protein L, component of type II secretion system.
 
  
 0.892
Rta_29670
Candidate translocation protein in type III secretion.
  
 
 0.859
Rta_29680
Candidate translocation protein in type III secretion, membrane protein.
  
 
 0.849
gspJ
Candidate pseudopilin, general secretion pathway protein J precursor (PilD-dependent protein), component of type II secretion system.
 
  
 0.833
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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