STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rta_35510Candidate citrate utilization protein B. (382 aa)    
Predicted Functional Partners:
Rta_35500
Fumarate reductase flavoprotein subunit precursor (Iron(III)-induced flavocytochrome C3)-like protein.
 
  
 0.963
mdh
Candidate malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
 0.847
Rta_35490
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
 
   
 0.759
Rta_35520
Conserved hypothetical protein.
       0.718
tctC-64
Candidate extracytoplasmic binding receptor.
       0.613
Rta_35540
D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein.
       0.613
gtlD
Candidate Glutamate synthase [NADPH] small chain.
  
 
 0.576
Rta_36990
Candidate indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
  
  
 0.575
fumA
Candidate fumarate hydratase class I (Fumarase); Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.539
Rta_18430
Succinate dehydrogenase, flavoprotein subunit (Fumarate reductase)-like protein.
 
  
 0.508
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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