Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_35626Hypothetical protein. (89 aa)    
Predicted Functional Partners:
Rta_33790
Conserved hypothetical protein.
   
    0.634
Rta_13660
Prephenate dehydrogenase-like protein.
  
    0.534
Rta_35630
Candidate response regulator, Fis.
     
 0.514
rpsU
Candidate 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.442
Rta_35640
Candidate histidine kinase, classic.
       0.442
Rta_35650
Conserved hypothetical protein.
       0.442
rpsJ
Candidate 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
    
 
 0.420
rpsI
Candidate 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
 
 0.419
rpmE
50S ribosomal protein L31 type B; Belongs to the bacterial ribosomal protein bL31 family.
    
 
 0.419
guaA
Candidate GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.418
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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