Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_35640Candidate histidine kinase, classic. (765 aa)    
Predicted Functional Partners:
Rta_35630
Candidate response regulator, Fis.
 
 0.996
Rta_35650
Conserved hypothetical protein.
 
     0.946
Rta_35660
16S rRNA m5C967 methyltransferase-like protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
   
 0.759
Rta_35670
Conserved hypothetical protein.
       0.622
Rta_23460
Candidate membrane protein.
  
     0.600
Rta_19460
Candidate histidine kinase, atypical hybrid.
   
 
 0.588
skp
Candidate Outer membrane protein periplasmic chaperone OmpH; Belongs to the skp family.
  
     0.576
Rta_01630
Candidate histidine kinase, atypical unorthodox.
   
 
 0.562
Rta_31260
Alkylglycerone-phosphate synthase (Alkyldihydroxyacetonephosphate synthase)-like protein.
 
     0.542
Rta_12360
Candidate histidine kinase, atypical hybrid.
   
 
 0.541
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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