Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_35770Conserved hypothetical protein. (353 aa)    
Predicted Functional Partners:
phbC
(PHB polymerase) (Poly(3-hydroxyalkanoate) polymerase) (PHA polymerase).
 
   
 0.656
Rta_37390
Protein kinase (serine/threonine-protein kinase)-like protein.
     
 0.647
Rta_17870
Protein kinase (serine/threonine-protein kinase)-like protein.
     
 0.643
Rta_19900
Protein kinase (serine/threonine-protein kinase)-like protein.
     
 0.643
Rta_35230
Candidate ABC type dipeptide/oligopeptide transport system, periplasmic component.
      
 0.636
Rta_35260
Candidate ABC type dipeptide/oligopeptide transport system, periplasmic component.
      
 0.636
Rta_33370
Candidate ABC type dipeptide/oligopeptide transport system, periplasmic component.
      
 0.635
Rta_25370
DNA internalization-related competence protein-like protein.
     
 0.450
Rta_17360
Conserved hypothetical protein.
 
     0.412
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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