Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_35930Candidate membrane protein. (654 aa)    
Predicted Functional Partners:
apaG
Candidate ApaG protein.
       0.760
Rta_03170
Candidate membrane protein.
 
     0.743
argS
Candidate Arginyl-tRNA synthetase.
   
    0.619
rpe
Candidate ribulose-phosphate 3-epimerase (Pentose-5-phosphate 3- epimerase).
       0.553
Rta_35940
Membrane efflux protein-like protein.
       0.508
Rta_35950
Candidate carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
       0.508
Rta_25430
Conserved hypothetical protein.
 
     0.456
Rta_28650
HemY protein-like protein.
  
     0.444
tctB-2
Candidate small integral membrane protein.
  
     0.405
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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