Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
oxyRCandidate transcriptional regulator OxyR; Hydrogen peroxide-inducible genes activator, LysR family; Belongs to the LysR transcriptional regulatory family. (317 aa)    
Predicted Functional Partners:
recG
Candidate ATP-dependent DNA helicase recG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
     
 0.737
Rta_29330
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.730
Rta_01100
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.647
Rta_09350
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.620
Rta_21720
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.587
Rta_26740
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.569
Rta_36250
DNA-binding ferritin-like protein-like protein; Belongs to the Dps family.
     
 0.563
ubiA
Candidate 4-hydroxybenzoate octaprenyltransferase (4-HB polyprenyltransferase); Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
       0.560
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.560
Rta_02990
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.442
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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