Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Rta_03770 | Rta_31040 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.431 |
Rta_03770 | Rta_36400 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.598 |
Rta_03770 | Rta_36410 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.628 |
Rta_07240 | Rta_15340 | Dihydroneopterin aldolase-like protein. | Hypothetical protein. | 0.612 |
Rta_07240 | Rta_31040 | Dihydroneopterin aldolase-like protein. | Conserved hypothetical protein. | 0.482 |
Rta_07240 | Rta_31210 | Dihydroneopterin aldolase-like protein. | Conserved hypothetical protein. | 0.554 |
Rta_07240 | Rta_36400 | Dihydroneopterin aldolase-like protein. | Conserved hypothetical protein. | 0.485 |
Rta_07240 | Rta_36410 | Dihydroneopterin aldolase-like protein. | Conserved hypothetical protein. | 0.452 |
Rta_07240 | Rta_36950 | Dihydroneopterin aldolase-like protein. | Conserved hypothetical protein. | 0.520 |
Rta_07240 | Rta_37460 | Dihydroneopterin aldolase-like protein. | Transcriptional regulator, MarR family-like protein. | 0.507 |
Rta_15340 | Rta_07240 | Hypothetical protein. | Dihydroneopterin aldolase-like protein. | 0.612 |
Rta_15340 | Rta_31040 | Hypothetical protein. | Conserved hypothetical protein. | 0.686 |
Rta_15340 | Rta_31210 | Hypothetical protein. | Conserved hypothetical protein. | 0.763 |
Rta_15340 | Rta_36400 | Hypothetical protein. | Conserved hypothetical protein. | 0.646 |
Rta_15340 | Rta_36950 | Hypothetical protein. | Conserved hypothetical protein. | 0.620 |
Rta_15340 | Rta_37460 | Hypothetical protein. | Transcriptional regulator, MarR family-like protein. | 0.774 |
Rta_31040 | Rta_03770 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.431 |
Rta_31040 | Rta_07240 | Conserved hypothetical protein. | Dihydroneopterin aldolase-like protein. | 0.482 |
Rta_31040 | Rta_15340 | Conserved hypothetical protein. | Hypothetical protein. | 0.686 |
Rta_31040 | Rta_31210 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.657 |
page 1 of 4