Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_36540Conserved hypothetical protein. (337 aa)    
Predicted Functional Partners:
Rta_18070
Candidate maleylacetoacetate isomerase.
 
 
 0.973
Rta_21750
Candidate maleylacetoacetate isomerase.
 
 
 0.969
Rta_17920
Conserved hypothetical protein.
     
 0.904
Rta_28080
Succinate dehydrogenase cytochrome b-556 subunit-like protein.
  
 
  0.839
Rta_05500
Candidate 4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.837
fumC
Candidate fumarate hydratase class II (Fumarase C); Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
  0.819
sdhA
Candidate succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
  0.812
Rta_28090
Succinate dehydrogenase hydrophobic membrane anchor protein-like protein.
   
 
  0.808
sdhB
Candidate succinate dehydrogenase iron-sulfur protein.
  
 
  0.805
sdhB-2
Candidate succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
  0.805
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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