Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_36590CjrA protein-like protein. (252 aa)    
Predicted Functional Partners:
Rta_36580
Candidate membrane protein.
 
     0.704
Rta_36950
Conserved hypothetical protein.
  
     0.577
Rta_11670
Candidate periplasmic component.
  
    0.514
addB
Candidate ATP-dependent nuclease subunit B.
  
     0.497
Rta_11410
Transcriptional regulator, MarR family-like protein.
  
     0.489
gspJ
Candidate pseudopilin, general secretion pathway protein J precursor (PilD-dependent protein), component of type II secretion system.
  
     0.480
gspL
Candidate general secretion pathway protein L, component of type II secretion system.
  
     0.477
Rta_05220
Conserved hypothetical protein.
  
     0.470
addA
Candidate ATP-dependent nuclease subunit A.
  
     0.469
Rta_09570
Conserved hypothetical protein.
  
     0.462
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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