Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_36920Conserved hypothetical protein. (416 aa)    
Predicted Functional Partners:
pilQ
Candidate Fimbrial assembly protein pilQ precursor, secretin family.
 
 
 
 0.960
pilO
Candidate Tfp pilus assembly protein PilO.
 
   0.878
pilN
Candidate Tfp pilus assembly protein PilN.
  
 
   0.875
pilM
Candidate type IV pilus assembly protein.
  
 
   0.872
Rta_19820
Candidate type 4 fimbrial biogenesis protein PilZ.
  
    0.781
pilP
Candidate type IV pilus assembly protein PilP, putative lipoprotein of the pilotin family.
 
     0.775
Rta_18920
Type 4 fimbrial biogenesis protein PilF-like protein.
  
   
 0.767
smf
Smf protein.
       0.762
Rta_25240
Candidate membrane protein.
  
   
 0.754
Rta_25230
Conserved hypothetical protein.
 
     0.753
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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