Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_37090Transcriptional regulator, TetR family-like protein. (207 aa)    
Predicted Functional Partners:
Rta_37100
Candidate outer membrane channel.
 
   
 0.883
Rta_37110
Periplasmic linker protein-like protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.810
Rta_37120
Candidate inner membrane transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.763
Rta_22330
Exoenzyme regulation regulon ORF2-like protein.
  
    0.485
glnE
Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory regi [...]
     
 0.468
Rta_24290
Conserved hypothetical protein.
  
     0.464
Rta_08650
Conserved hypothetical protein.
  
 
   0.442
Rta_37070
Conserved hypothetical protein.
 
     0.417
Rta_08670
Conserved hypothetical protein.
  
     0.406
Rta_34400
Candidate histidine kinase, classic.
  
   
 0.403
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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