Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_37150Deoxyribodipyrimidine photolyase-like protein. (523 aa)    
Predicted Functional Partners:
phrB
Candidate deoxyribodipyrimidine photolyase (photoreactivating enzyme); Belongs to the DNA photolyase family.
 
   
 0.800
Rta_37180
Conserved hypothetical protein.
 
   
 0.676
Rta_37220
Conserved hypothetical protein.
 
   
 0.671
melB
Candidate Na+/melibiose symporter.
 
     0.663
Rta_37170
NAD/FAD-binding protein-like protein.
 
   
 0.643
phrA
Candidate DNA repair photolyase.
      
 0.618
Rta_37130
Candidate Aut protein (necessary for autotrophic growth); Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
       0.615
Rta_37140
Conserved hypothetical protein.
       0.615
Rta_37160
Candidate glutathione peroxidase; Belongs to the glutathione peroxidase family.
     
 0.607
Rta_37230
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein.
 
   
 0.606
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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